Jaguar 5.5 User Manual

Contents

Chapter 1: Introduction.......................................................................................1

1.1 Conventions Used in This Manual.......................................................................2

1.2 Citing Jaguar in Publications ...............................................................................3

Chapter 2: The Maestro Graphical User Interface...........................................5

2.1 Starting Maestro...................................................................................................5

2.2 The Maestro Main Window .................................................................................7

2.3 Maestro Projects ..................................................................................................7

2.4 Building a Structure .............................................................................................9

2.5 Atom Selection ..................................................................................................10

2.6 Toolbar Controls ................................................................................................11

2.7 Mouse Functions................................................................................................14
2.7.1 Mouse Functions in the Workspace .......................................................14
2.7.2 Mouse Functions in the Project Facility.................................................15
2.8 Shortcut Key Combinations ...............................................................................16

2.9 Undoing an Operation........................................................................................17

2.10 Maestro Command Scripts...............................................................................17

2.11 Specifying a Maestro Working Directory ........................................................18

2.12 Running and Monitoring Jobs..........................................................................19

2.13 Help..................................................................................................................20

2.14 Ending a Maestro Session................................................................................21

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